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    LOC103638582 pentatricopeptide repeat-containing protein MRL1, chloroplastic [ Zea mays ]

    Gene ID: 103638582, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC103638582
    Gene description
    pentatricopeptide repeat-containing protein MRL1, chloroplastic
    Locus tag
    ZEAMMB73_Zm00001d030398
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GRMZM2G018929; GRMZM2G335703
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    Genomic context

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    See LOC103638582 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 1 NC_050096.1 (129109143..129156333, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 1 NC_024459.2 (129227420..129274575, complement)

    Chromosome 1 - NC_050096.1Genomic Context describing neighboring genes Neighboring gene bifunctional dihydrofolate reductase-thymidylate synthase-like Neighboring gene uncharacterized LOC109941388 Neighboring gene putative clathrin assembly protein At2g25430 Neighboring gene uncharacterized LOC103638614

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein MRL1, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050096.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      129109143..129156333 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008661455.3 → XP_008659677.1  pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A0A1D6KCE4, A0A1D6KCE5
      Conserved Domains (2) summary
      sd00004
      Location:499 → 525
      PPR; PPR repeat [structural motif]
      cl25449
      Location:100 → 1089
      PPR_2; PPR repeat family

    2. XM_008661462.3 → XP_008659684.1  pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X2

      UniProtKB/TrEMBL
      A0A1D6KCE6, A0A804LPV5
      Conserved Domains (5) summary
      TIGR00756
      Location:175 → 207
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:175 → 201
      PPR; PPR repeat [structural motif]
      pfam12854
      Location:202 → 234
      PPR_1; PPR repeat
      pfam13041
      Location:170 → 219
      PPR_2; PPR repeat family
      pfam13812
      Location:137 → 170
      PPR_3; Pentatricopeptide repeat domain
    Nucleotide Protein
    Heading Accession and Version

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