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    LOC100193179 uncharacterized LOC100193179 [ Zea mays ]

    Gene ID: 100193179, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100193179
    Gene description
    uncharacterized LOC100193179
    Locus tag
    ZEAMMB73_Zm00001d031665
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    bHLH173; si683023f08; GRMZM5G882527
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    Genomic context

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    See LOC100193179 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 1 NC_050096.1 (200045388..200047964, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 1 NC_024459.2 (198078461..198080957, complement)

    Chromosome 1 - NC_050096.1Genomic Context describing neighboring genes Neighboring gene transfer RNA valine (anticodon AAC) Neighboring gene transfer RNA valine (anticodon AAC) Neighboring gene putative oxidoreductase, aldo/keto reductase family protein Neighboring gene putative ARF GTPase activating domain protein with ankyrin repeat-containing protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    3. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized LOC100193179; uncharacterized protein LOC100193179
    Names
    Transcription factor bHLH137
    bHLH transcription factor GBOF-1
    putative HLH DNA-binding domain superfamily protein
    si683023f08(59)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001138334.1 → NP_001131806.1  uncharacterized LOC100193179

      See identical proteins and their annotated locations for NP_001131806.1

      Status: PROVISIONAL

      Source sequence(s)
      BT035377
      UniProtKB/TrEMBL
      B4FE39
      Conserved Domains (2) summary
      PRK12678
      Location:53 → 166
      PRK12678; transcription termination factor Rho; Provisional
      cd18919
      Location:135 → 221
      bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050096.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      200045388..200047964 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008649808.3 → XP_008648030.1  uncharacterized protein LOC100193179 isoform X1

      See identical proteins and their annotated locations for XP_008648030.1

      UniProtKB/TrEMBL
      A0A804LU92
      Conserved Domains (1) summary
      smart00353
      Location:151 → 200
      HLH; helix loop helix domain
    Nucleotide Protein
    Heading Accession and Version

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