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    LOC103496545 ETHYLENE INSENSITIVE 3-like 1 protein [ Cucumis melo (muskmelon) ]

    Gene ID: 103496545, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC103496545
    Gene description
    ETHYLENE INSENSITIVE 3-like 1 protein
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Cucumis melo
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
    Also known as
    CmEIL2
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    Genomic context

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    See LOC103496545 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 3 NC_066859.1 (21887231..21891709, complement)
    101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546307.1 (1882015..1886057)

    Chromosome 3 - NC_066859.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127148718 Neighboring gene uncharacterized LOC103496546 Neighboring gene calcium and calcium/calmodulin-dependent serine/threonine-protein kinase-like Neighboring gene type I inositol polyphosphate 5-phosphatase 10 Neighboring gene SUN domain-containing protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ETHYLENE INSENSITIVE 3-like 1 protein
    Names
    EIN3-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001297500.2 → NP_001284429.1  ETHYLENE INSENSITIVE 3-like 1 protein

      See identical proteins and their annotated locations for NP_001284429.1

      Status: PROVISIONAL

      Source sequence(s)
      AB063192
      UniProtKB/TrEMBL
      A0A1S3C4F9, A0A5A7SN83, Q948P3
      Conserved Domains (1) summary
      pfam04873
      Location:50 → 296
      EIN3; Ethylene insensitive 3

    RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Genomic

    1. NC_066859.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

      Range
      21887231..21891709 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_051081836.1 → XP_050937793.1  ETHYLENE INSENSITIVE 3-like 1 protein isoform X1

      UniProtKB/TrEMBL
      Q948P3

    2. XM_051081837.1 → XP_050937794.1  ETHYLENE INSENSITIVE 3-like 1 protein isoform X1

      UniProtKB/TrEMBL
      Q948P3

    RNA

    1. XR_007819232.1 RNA Sequence

    2. XR_007819233.1 RNA Sequence

    3. XR_007819234.1 RNA Sequence

    4. XR_539157.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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