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    LOC103500850 aspartic proteinase 36-like [ Cucumis melo (muskmelon) ]

    Gene ID: 103500850, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC103500850
    Gene description
    aspartic proteinase 36-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis melo
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC103500850 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 8 NC_066864.1 (8701219..8706853, complement)
    101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546335.1 (399544..407037)

    Chromosome 8 - NC_066864.1Genomic Context describing neighboring genes Neighboring gene threonine dehydratase biosynthetic, chloroplastic-like Neighboring gene threonine dehydratase biosynthetic, chloroplastic-like Neighboring gene carotene epsilon-monooxygenase, chloroplastic Neighboring gene UDP-glycosyltransferase 73D1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables aspartic-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aspartic proteinase 36-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Genomic

    1. NC_066864.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

      Range
      8701219..8706853 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008464292.3 → XP_008462514.1  aspartic proteinase 36-like

      UniProtKB/TrEMBL
      A0A1S3CH65, A0A9I9DVK5
      Conserved Domains (3) summary
      cd05476
      Location:82 → 436
      pepsin_A_like_plant; Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants
      pfam00026
      Location:82 → 432
      Asp; Eukaryotic aspartyl protease
      cl11403
      Location:89 → 143
      pepsin_retropepsin_like; Cellular and retroviral pepsin-like aspartate proteases

    RNA

    1. XR_540156.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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