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    LOC103499353 methyl-CpG-binding domain protein 4-like protein [ Cucumis melo (muskmelon) ]

    Gene ID: 103499353, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC103499353
    Gene description
    methyl-CpG-binding domain protein 4-like protein
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis melo
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC103499353 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 10 NC_066866.1 (25848355..25852916)
    101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546323.1 (429724..434262)

    Chromosome 10 - NC_066866.1Genomic Context describing neighboring genes Neighboring gene probable beta-1,3-galactosyltransferase 2 Neighboring gene uncharacterized LOC103499390 Neighboring gene uncharacterized LOC103499392 Neighboring gene uncharacterized LOC127151186

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in base-excision repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    methyl-CpG-binding domain protein 4-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Genomic

    1. NC_066866.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

      Range
      25848355..25852916
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008462337.3 → XP_008460559.1  methyl-CpG-binding domain protein 4-like protein

      UniProtKB/TrEMBL
      A0A1S3CCU6, A0A5D3CU57
      Conserved Domains (1) summary
      cl23768
      Location:368 → 460
      ENDO3c; endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
    Nucleotide Protein
    Heading Accession and Version

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