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    LOC103494879 ervatamin-B-like [ Cucumis melo (muskmelon) ]

    Gene ID: 103494879, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC103494879
    Gene description
    ervatamin-B-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis melo
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC103494879 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 7 NC_066863.1 (27315822..27317294)
    101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546298.1 (1671535..1672852)

    Chromosome 7 - NC_066863.1Genomic Context describing neighboring genes Neighboring gene ribonuclease H2 subunit A Neighboring gene ervatamin-B-like Neighboring gene uncharacterized LOC103494880 Neighboring gene protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis involved in protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lysosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ervatamin-B-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Genomic

    1. NC_066863.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

      Range
      27315822..27317294
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008456261.2 → XP_008454483.1  ervatamin-B-like

      UniProtKB/TrEMBL
      A0A1S3BYQ3, A0A5A7TM64
      Conserved Domains (2) summary
      pfam00112
      Location:129 → 346
      Peptidase_C1; Papain family cysteine protease
      pfam08246
      Location:42 → 97
      Inhibitor_I29; Cathepsin propeptide inhibitor domain (I29)
    Nucleotide Protein
    Heading Accession and Version

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