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    LOC103494128 synaptotagmin-5 [ Cucumis melo (muskmelon) ]

    Gene ID: 103494128, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC103494128
    Gene description
    synaptotagmin-5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis melo
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC103494128 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 2 NC_066858.1 (23551548..23558630)
    101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546297.1 (1695551..1702705, complement)

    Chromosome 2 - NC_066858.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103494129 Neighboring gene VQ motif-containing protein 20 Neighboring gene CRM-domain containing factor CFM3, chloroplastic/mitochondrial Neighboring gene NAC domain-containing protein 92

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    synaptotagmin-5; uncharacterized protein LOC103494128
    Names
    synaptotagmin-4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Genomic

    1. NC_066858.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

      Range
      23551548..23558630
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008455175.3 → XP_008453397.1  synaptotagmin-5 isoform X1

      UniProtKB/TrEMBL
      A0A1S3BXB4, A0A5D3DY04
      Conserved Domains (2) summary
      COG5038
      Location:33 → 662
      COG5038; Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
      pfam00168
      Location:613 → 709
      C2; C2 domain

    2. XM_008455176.3 → XP_008453398.1  uncharacterized protein LOC103494128 isoform X2

      UniProtKB/TrEMBL
      A0A1S3BVL0
      Conserved Domains (2) summary
      pfam00168
      Location:449 → 545
      C2; C2 domain
      cl14603
      Location:123 → 216
      C2; C2 domain
    Nucleotide Protein
    Heading Accession and Version

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