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    LOC103490883 protein transport protein SEC16A homolog [ Cucumis melo (muskmelon) ]

    Gene ID: 103490883, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC103490883
    Gene description
    protein transport protein SEC16A homolog
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis melo
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC103490883 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 6 NC_066862.1 (29501776..29511733)
    101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546288.1 (2195996..2205903)

    Chromosome 6 - NC_066862.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103490880 Neighboring gene uncharacterized LOC103490882 Neighboring gene uncharacterized LOC127149955 Neighboring gene uncharacterized LOC107990976 Neighboring gene asparagine--tRNA ligase, chloroplastic/mitochondrial Neighboring gene peroxisome biogenesis protein 19-1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in COPII vesicle coating IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in Golgi organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to endoplasmic reticulum exit site IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in ER to Golgi transport vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum exit site IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein transport protein SEC16A homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Genomic

    1. NC_066862.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

      Range
      29501776..29511733
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008450621.3 → XP_008448843.1  protein transport protein SEC16A homolog

      UniProtKB/TrEMBL
      A0A1S3BL98, A0A5A7TD51
      Conserved Domains (2) summary
      cd09233
      Location:614 → 982
      ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
      pfam12932
      Location:543 → 667
      Sec16; Vesicle coat trafficking protein Sec16 mid-region
    Nucleotide Protein
    Heading Accession and Version

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