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    LOC103484814 WD40 repeat-containing protein HOS15 [ Cucumis melo (muskmelon) ]

    Gene ID: 103484814, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC103484814
    Gene description
    WD40 repeat-containing protein HOS15
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis melo
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC103484814 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 8 NC_066864.1 (3913363..3928579)
    101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546274.1 (3935940..3951762)

    Chromosome 8 - NC_066864.1Genomic Context describing neighboring genes Neighboring gene probable receptor-like protein kinase At2g23200 Neighboring gene cytochrome P450 81Q32-like Neighboring gene pentatricopeptide repeat-containing protein ELI1, chloroplastic Neighboring gene zinc finger protein 7-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone deacetylase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WD40 repeat-containing protein HOS15
    Names
    F-box-like/WD repeat-containing protein TBL1X

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Genomic

    1. NC_066864.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

      Range
      3913363..3928579
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008442111.3 → XP_008440333.1  WD40 repeat-containing protein HOS15

      UniProtKB/TrEMBL
      A0A1S3B1H4, A0A5D3CNC3
      Conserved Domains (4) summary
      COG2319
      Location:242 → 602
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:248 → 559
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam08513
      Location:8 → 33
      LisH; LisH
      sd00039
      Location:258 → 312
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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