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    LOC103407015 agamous-like MADS-box protein AGL62 [ Malus domestica (apple) ]

    Gene ID: 103407015, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC103407015
    Gene description
    agamous-like MADS-box protein AGL62
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Malus domestica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
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    Genomic context

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    See LOC103407015 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current ASM211411v1 (GCF_002114115.1) 2 NC_041790.1 (25710805..25711554)
    101 previous assembly MalDomGD1.0 (GCF_000148765.1) 2 NC_024240.1 (23728930..23729634, complement)

    Chromosome 2 - NC_041790.1Genomic Context describing neighboring genes Neighboring gene rac-like GTP-binding protein RAC2 Neighboring gene uncharacterized LOC108170122 Neighboring gene cytochrome c oxidase-assembly factor COX23, mitochondrial Neighboring gene uncharacterized LOC114823773

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    agamous-like MADS-box protein AGL62

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM211411v1 Primary Assembly

    Genomic

    1. NC_041790.1 Reference ASM211411v1 Primary Assembly

      Range
      25710805..25711554
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008345980.2 → XP_008344202.1  agamous-like MADS-box protein AGL62

      UniProtKB/TrEMBL
      A0A498KGD9
      Conserved Domains (1) summary
      cd00265
      Location:13 → 80
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    Nucleotide Protein
    Heading Accession and Version

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