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    LOC11409870 WD40 repeat-containing protein HOS15 [ Medicago truncatula (barrel medic) ]

    Gene ID: 11409870, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC11409870
    Gene description
    WD40 repeat-containing protein HOS15
    Locus tag
    MtrunA17_Chr5g0401671
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11409870 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 5 NC_053046.1 (5873978..5882085, complement)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 5 NC_016411.2 (5866152..5874217, complement)

    Chromosome 5 - NC_053046.1Genomic Context describing neighboring genes Neighboring gene protein NONRESPONDING TO OXYLIPINS 2, mitochondrial Neighboring gene WD40 repeat-containing protein HOS15 Neighboring gene cytochrome P450 81E8-like Neighboring gene cytochrome P450 81E8-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone deacetylase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WD40 repeat-containing protein HOS15
    Names
    putative transcription factor WD40-like family
    transducin family protein/WD-40 repeat protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053046.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      5873978..5882085 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039834443.1 → XP_039690377.1  WD40 repeat-containing protein HOS15 isoform X1

      Conserved Domains (3) summary
      cd00200
      Location:240 → 578
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:250 → 304
      7WD40; WD40 repeat [structural motif]
      pfam08513
      Location:8 → 32
      LisH

    2. XM_003611609.4 → XP_003611657.2  WD40 repeat-containing protein HOS15 isoform X2

      UniProtKB/TrEMBL
      A0A0C3XC80, G7K578
      Conserved Domains (3) summary
      cd00200
      Location:240 → 551
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:309 → 345
      7WD40; WD40 repeat [structural motif]
      pfam08513
      Location:8 → 33
      LisH; LisH
    Nucleotide Protein
    Heading Accession and Version

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