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    LOC103342159 cell division control protein 48 homolog D [ Prunus mume (Japanese apricot) ]

    Gene ID: 103342159, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC103342159
    Gene description
    cell division control protein 48 homolog D
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Prunus mume
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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    Genomic context

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    See LOC103342159 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    101 current P.mume_V1.0 (GCF_000346735.1) Unplaced Scaffold NW_007362499.1 (335642..340785, complement)

    NW_007362499.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At2g32630 Neighboring gene uncharacterized LOC103342158 Neighboring gene UDP-glycosyltransferase 86A1-like Neighboring gene UDP-glycosyltransferase 86A1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_007362499.1 Unplaced Scaffold Reference P.mume_V1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in autophagosome maturation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic spindle disassembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde protein transport, ER to cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of VCP-NPL4-UFD1 AAA ATPase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cell division control protein 48 homolog D

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Prunus mume Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.mume_V1.0 Primary Assembly

    Genomic

    1. NW_007362499.1 Reference P.mume_V1.0 Primary Assembly

      Range
      335642..340785 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008245756.1 → XP_008243978.1  cell division control protein 48 homolog D

      Conserved Domains (5) summary
      smart01072
      Location:136 → 196
      CDC48_2; Cell division protein 48 (CDC48) domain 2
      TIGR01243
      Location:30 → 768
      CDC48; AAA family ATPase, CDC48 subfamily
      pfam00004
      Location:245 → 375
      AAA; ATPase family associated with various cellular activities (AAA)
      pfam02359
      Location:30 → 112
      CDC48_N; Cell division protein 48 (CDC48), N-terminal domain
      pfam09336
      Location:721 → 764
      Vps4_C; Vps4 C terminal oligomerization domain
    Nucleotide Protein
    Heading Accession and Version

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