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    LOC103330807 zinc finger protein 598 [ Prunus mume (Japanese apricot) ]

    Gene ID: 103330807, updated on 28-Dec-2023

    Summary

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    Gene symbol
    LOC103330807
    Gene description
    zinc finger protein 598
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Prunus mume
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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    Genomic context

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    See LOC103330807 in Genome Data Viewer
    Location:
    chromosome: LG5
    Exon count:
    7
    Annotation release Status Assembly LG Location
    101 current P.mume_V1.0 (GCF_000346735.1) LG5 NC_024130.1 (3675989..3680042, complement)

    Linkage Group LG5 - NC_024130.1Genomic Context describing neighboring genes Neighboring gene cell death-related nuclease 4-like Neighboring gene retinoblastoma-related protein Neighboring gene putative disease resistance RPP13-like protein 1 Neighboring gene putative disease resistance RPP13-like protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_024130.1 Chromosome LG5 Reference P.mume_V1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ribosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rescue of stalled ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein 598

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Prunus mume Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.mume_V1.0 Primary Assembly

    Genomic

    1. NC_024130.1 Reference P.mume_V1.0 Primary Assembly

      Range
      3675989..3680042 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008233418.1 → XP_008231640.1  zinc finger protein 598

      Conserved Domains (2) summary
      COG5236
      Location:5 → 303
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      pfam13920
      Location:2 → 48
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
    Nucleotide Protein
    Heading Accession and Version

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