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    LOC18776349 probable polygalacturonase [ Prunus persica (peach) ]

    Gene ID: 18776349, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC18776349
    Gene description
    probable polygalacturonase
    Locus tag
    PRUPE_5G117600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Prunus persica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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    Genomic context

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    See LOC18776349 in Genome Data Viewer
    Location:
    chromosome: G5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current Prunus_persica_NCBIv2 (GCF_000346465.2) G5 NC_034013.1 (11899568..11904046, complement)

    Chromosome G5 - NC_034013.1Genomic Context describing neighboring genes Neighboring gene subtilisin-like protease SBT2.5 Neighboring gene putative receptor-like protein kinase At1g80870 Neighboring gene uncharacterized LOC18777068 Neighboring gene DNA primase small subunit Neighboring gene ethylene-responsive transcription factor ERF061

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_034013.1 Chromosome G5 Reference Prunus_persica_NCBIv2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times. Zeng L, et al. Nat Commun, 2014 Sep 24. PMID 25249442, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables polygalacturonase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable polygalacturonase
    Names
    pectin lyase-like superfamily protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Prunus persica Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Prunus_persica_NCBIv2 Primary Assembly

    Genomic

    1. NC_034013.1 Reference Prunus_persica_NCBIv2 Primary Assembly

      Range
      11899568..11904046 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007209081.2 → XP_007209143.1  probable polygalacturonase

      See identical proteins and their annotated locations for XP_007209143.1

      UniProtKB/TrEMBL
      A0A097PQW9, M5W9C6
      Conserved Domains (1) summary
      COG5434
      Location:19 → 400
      Pgu1; Polygalacturonase [Carbohydrate transport and metabolism]

    2. XM_020563467.1 → XP_020419056.1  probable polygalacturonase

      UniProtKB/TrEMBL
      A0A097PQW9, M5W9C6
      Conserved Domains (1) summary
      COG5434
      Location:19 → 400
      Pgu1; Polygalacturonase [Carbohydrate transport and metabolism]
    Nucleotide Protein Strain
    Heading Accession and Version

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