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    LOC18775224 probable E3 ubiquitin-protein ligase ARI8 [ Prunus persica (peach) ]

    Gene ID: 18775224, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC18775224
    Gene description
    probable E3 ubiquitin-protein ligase ARI8
    Locus tag
    PRUPE_6G364600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Prunus persica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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    Genomic context

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    See LOC18775224 in Genome Data Viewer
    Location:
    chromosome: G6
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    100 current Prunus_persica_NCBIv2 (GCF_000346465.2) G6 NC_034014.1 (30599534..30607750, complement)

    Chromosome G6 - NC_034014.1Genomic Context describing neighboring genes Neighboring gene ycf20-like protein Neighboring gene putative metallophosphoesterase At3g03305 Neighboring gene phosphoglycolate phosphatase 1B, chloroplastic Neighboring gene omega-hydroxypalmitate O-feruloyl transferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_034014.1 Chromosome G6 Reference Prunus_persica_NCBIv2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin conjugating enzyme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable E3 ubiquitin-protein ligase ARI8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Prunus persica Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Prunus_persica_NCBIv2 Primary Assembly

    Genomic

    1. NC_034014.1 Reference Prunus_persica_NCBIv2 Primary Assembly

      Range
      30599534..30607750 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007208647.2 → XP_007208709.1  probable E3 ubiquitin-protein ligase ARI8

      See identical proteins and their annotated locations for XP_007208709.1

      UniProtKB/TrEMBL
      M5WKX8
      Conserved Domains (4) summary
      smart00547
      Location:570 → 594
      ZnF_RBZ; Zinc finger domain
      smart00647
      Location:212 → 274
      IBR; In Between Ring fingers
      cd16623
      Location:143 → 193
      RING-HC_RBR_TRIAD1_like; RING finger, HC subclass, found in two RING fingers and DRIL [double RING finger linked] 1 (TRIAD1), ankyrin repeat and IBR domain-containing protein 1 (ANKIB1) and similar proteins
      pfam01485
      Location:296 → 335
      IBR; IBR domain, a half RING-finger domain
    Nucleotide Protein Strain
    Heading Accession and Version

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