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    w eye pigment precursor family transporter white [ Ceratitis capitata (Mediterranean fruit fly) ]

    Gene ID: 101458180, updated on 17-May-2024

    Summary

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    Gene symbol
    w
    Gene description
    eye pigment precursor family transporter white
    See related
    EnsemblRapid:GeneID_101458180
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ceratitis capitata
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Tephritoidea; Tephritidae; Ceratitis; Ceratitis
    Orthologs
    fruit fly all
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    Genomic context

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    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Ccap_2.1 (GCF_000347755.3) Unplaced Scaffold NW_019376314.1 (276304..288573)

    NW_019376314.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110118747 Neighboring gene uncharacterized LOC110118753 Neighboring gene transmembrane protein 120 homolog Neighboring gene Syntaxin 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019376314 Unplaced Scaffold Reference Ccap_2.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The white gene of Ceratitis capitata: a phenotypic marker for germline transformation. Zwiebel LJ, et al. Science, 1995 Dec 22. PMID 8533095
    2. A genomic perspective to assessing quality of mass-reared SIT flies used in Mediterranean fruit fly (Ceratitis capitata) eradication in California. Calla B, et al. BMC Genomics, 2014 Feb 5. PMID 24495485, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein white
    Names
    white

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001279365.1 → NP_001266294.1  protein white

      See identical proteins and their annotated locations for NP_001266294.1

      Status: PROVISIONAL

      Source sequence(s)
      X89933
      UniProtKB/Swiss-Prot
      Q17320
      UniProtKB/TrEMBL
      W8AX98
      Related
      NP_001266294.1, NM_001279365.1
      Conserved Domains (3) summary
      TIGR00955
      Location:59 → 679
      3a01204; The Eye Pigment Precursor Transporter (EPP) Family protein
      pfam01061
      Location:408 → 612
      ABC2_membrane; ABC-2 type transporter
      cl21455
      Location:103 → 314
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    RefSeqs of Annotated Genomes: Ceratitis capitata Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ccap_2.1 Primary Assembly

    Genomic

    1. NW_019376314.1 Reference Ccap_2.1 Primary Assembly

      Range
      276304..288573
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q17320.1 GenPept UniProtKB/Swiss-Prot:Q17320

    Gene LinkOut

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    Molecular Biology Databases