U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC100794867 jacalin-related lectin 19 [ Glycine max (soybean) ]

    Gene ID: 100794867, updated on 7-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC100794867
    Gene description
    jacalin-related lectin 19
    Locus tag
    GLYMA_15G022500v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 15
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 15 NC_038251.2 (1756622..1761369)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 15 NC_038251.1 (1756864..1761617)

    Chromosome 15 - NC_038251.2Genomic Context describing neighboring genes Neighboring gene uncharacterized RNA methyltransferase PG_1095-like Neighboring gene IAA-amino acid hydrolase ILR1-like 4 Neighboring gene ESCRT-related protein CHMP1B Neighboring gene uncharacterized LOC100500189 Neighboring gene small nucleolar RNA R24

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    jacalin-related lectin 19; putative FBD-associated F-box protein At5g22720

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038251.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      1756622..1761369
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006597118.4 → XP_006597181.1  putative FBD-associated F-box protein At5g22720 isoform X1

      See identical proteins and their annotated locations for XP_006597181.1

      UniProtKB/TrEMBL
      A0A0R0G341
      Conserved Domains (5) summary
      cd09612
      Location:510 → 635
      Jacalin; Jacalin-like plant lectin domain
      PLN03210
      Location:206 → 304
      PLN03210; Resistant to P. syringae 6; Provisional
      sd00032
      Location:208 → 232
      LRR_2; leucine-rich repeat [structural motif]
      sd00034
      Location:187 → 200
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam00646
      Location:45 → 82
      F-box; F-box domain

    2. XM_006597120.4 → XP_006597183.1  putative FBD-associated F-box protein At5g22720 isoform X2

      See identical proteins and their annotated locations for XP_006597183.1

      UniProtKB/TrEMBL
      K7M944, K7M945
      Conserved Domains (3) summary
      sd00032
      Location:208 → 232
      LRR_2; leucine-rich repeat [structural motif]
      sd00034
      Location:187 → 200
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam00646
      Location:45 → 82
      F-box; F-box domain

    3. XM_041009780.1 → XP_040865714.1  putative FBD-associated F-box protein At5g22720 isoform X1

      UniProtKB/TrEMBL
      A0A0R0G341
      Conserved Domains (5) summary
      cd09612
      Location:510 → 635
      Jacalin; Jacalin-like plant lectin domain
      PLN03210
      Location:206 → 304
      PLN03210; Resistant to P. syringae 6; Provisional
      sd00032
      Location:208 → 232
      LRR_2; leucine-rich repeat [structural motif]
      sd00034
      Location:187 → 200
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam00646
      Location:45 → 82
      F-box; F-box domain

    4. XM_006597119.4 → XP_006597182.1  putative FBD-associated F-box protein At5g22720 isoform X1

      See identical proteins and their annotated locations for XP_006597182.1

      UniProtKB/TrEMBL
      A0A0R0G341
      Conserved Domains (5) summary
      cd09612
      Location:510 → 635
      Jacalin; Jacalin-like plant lectin domain
      PLN03210
      Location:206 → 304
      PLN03210; Resistant to P. syringae 6; Provisional
      sd00032
      Location:208 → 232
      LRR_2; leucine-rich repeat [structural motif]
      sd00034
      Location:187 → 200
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam00646
      Location:45 → 82
      F-box; F-box domain

    5. XM_041009781.1 → XP_040865715.1  putative FBD-associated F-box protein At5g22720 isoform X2

      UniProtKB/TrEMBL
      K7M944, K7M945
      Conserved Domains (3) summary
      sd00032
      Location:208 → 232
      LRR_2; leucine-rich repeat [structural motif]
      sd00034
      Location:187 → 200
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam00646
      Location:45 → 82
      F-box; F-box domain

    6. XM_041009782.1 → XP_040865716.1  putative FBD-associated F-box protein At5g22720 isoform X2

      UniProtKB/TrEMBL
      K7M944, K7M945
      Conserved Domains (3) summary
      sd00032
      Location:208 → 232
      LRR_2; leucine-rich repeat [structural motif]
      sd00034
      Location:187 → 200
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam00646
      Location:45 → 82
      F-box; F-box domain

    7. XM_006597121.4 → XP_006597184.1  jacalin-related lectin 19 isoform X3

      UniProtKB/TrEMBL
      I1MCX5
      Conserved Domains (1) summary
      cd09612
      Location:20 → 145
      Jacalin; Jacalin-like plant lectin domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases