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    LOC100798122 transcription factor EGL1 [ Glycine max (soybean) ]

    Gene ID: 100798122, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100798122
    Gene description
    transcription factor EGL1
    Locus tag
    GLYMA_03G009500v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100798122 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 3 NC_016090.4 (933909..939680)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 3 NC_016090.3 (947813..953567)

    Chromosome 3 - NC_016090.4Genomic Context describing neighboring genes Neighboring gene mediator of RNA polymerase II transcription subunit 12 Neighboring gene elicitor-responsive protein 3 Neighboring gene gibberellin 20-oxidase-like protein Neighboring gene uncharacterized LOC100800227

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor EGL1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_016090.4 Reference Glycine_max_v4.0 Primary Assembly

      Range
      933909..939680
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006576260.4 → XP_006576323.1  transcription factor EGL1 isoform X2

      See identical proteins and their annotated locations for XP_006576323.1

      UniProtKB/TrEMBL
      A0A0R0J0F5, A0A0R0KDC8
      Conserved Domains (2) summary
      pfam14215
      Location:19 → 197
      bHLH-MYC_N; bHLH-MYC and R2R3-MYB transcription factors N-terminal
      cl00081
      Location:451 → 511
      bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily

    2. XM_026127710.2 → XP_025983495.1  transcription factor EGL1 isoform X4

      UniProtKB/TrEMBL
      A0A0R0J0F5
      Conserved Domains (2) summary
      smart00353
      Location:418 → 461
      HLH; helix loop helix domain
      pfam14215
      Location:19 → 182
      bHLH-MYC_N; bHLH-MYC and R2R3-MYB transcription factors N-terminal

    3. XM_003520948.5 → XP_003520996.1  transcription factor EGL1 isoform X1

      UniProtKB/TrEMBL
      A0A0R0J0F5, I1JK86
      Conserved Domains (2) summary
      pfam14215
      Location:19 → 202
      bHLH-MYC_N; bHLH-MYC and R2R3-MYB transcription factors N-terminal
      cl00081
      Location:456 → 516
      bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily

    4. XM_006576261.4 → XP_006576324.1  transcription factor EGL1 isoform X3

      UniProtKB/TrEMBL
      A0A0R0J0F5
      Conserved Domains (2) summary
      pfam14215
      Location:19 → 187
      bHLH-MYC_N; bHLH-MYC and R2R3-MYB transcription factors N-terminal
      cl00081
      Location:423 → 483
      bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily
    Nucleotide Protein
    Heading Accession and Version

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