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    LOC102610550 zinc finger CCCH domain-containing protein 14 [ Citrus sinensis (sweet orange) ]

    Gene ID: 102610550, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC102610550
    Gene description
    zinc finger CCCH domain-containing protein 14
    Locus tag
    KPL70_002408
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Citrus sinensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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    Genomic context

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    See LOC102610550 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103 current DVS_A1.0 (GCF_022201045.2) 2 NC_068557.1 (1320886..1326428, complement)
    102 previous assembly Csi_valencia_1.0 (GCF_000317415.1) Unplaced Scaffold NW_006257092.1 (109202..114731)

    Chromosome 2 - NC_068557.1Genomic Context describing neighboring genes Neighboring gene GATA transcription factor 29-like Neighboring gene GATA transcription factor 19-like Neighboring gene protein NRT1/ PTR FAMILY 7.1 Neighboring gene AP2/ERF and B3 domain-containing transcription factor At1g51120

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger CCCH domain-containing protein 14

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Citrus sinensis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference DVS_A1.0 Primary Assembly

    Genomic

    1. NC_068557.1 Reference DVS_A1.0 Primary Assembly

      Range
      1320886..1326428 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006492596.4 → XP_006492659.1  zinc finger CCCH domain-containing protein 14

      See identical proteins and their annotated locations for XP_006492659.1

      UniProtKB/TrEMBL
      A0A067EZQ2
      Conserved Domains (3) summary
      smart00356
      Location:267 → 291
      ZnF_C3H1; zinc finger
      cd00105
      Location:181 → 241
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
      pfam00642
      Location:107 → 132
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    Nucleotide Protein
    Heading Accession and Version

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