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    LOC102627257 uncharacterized LOC102627257 [ Citrus sinensis (sweet orange) ]

    Gene ID: 102627257, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC102627257
    Gene description
    uncharacterized LOC102627257
    Locus tag
    KPL70_027758
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Citrus sinensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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    Genomic context

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    See LOC102627257 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current DVS_A1.0 (GCF_022201045.2) 9 NC_068564.1 (33624869..33628045)
    102 previous assembly Csi_valencia_1.0 (GCF_000317415.1) 4 NC_023049.1 (415385..418593, complement)

    Chromosome 9 - NC_068564.1Genomic Context describing neighboring genes Neighboring gene ABC transporter I family member 1 Neighboring gene FIP1[V]-like protein Neighboring gene probable CCR4-associated factor 1 homolog 6 Neighboring gene transfer RNA threonine (anticodon AGU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of TRAPPI protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of TRAPPII protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of TRAPPIII protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC102627257
    Names
    trafficking protein particle complex subunit 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Citrus sinensis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference DVS_A1.0 Primary Assembly

    Genomic

    1. NC_068564.1 Reference DVS_A1.0 Primary Assembly

      Range
      33624869..33628045
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025097286.2 → XP_024953054.2  uncharacterized protein LOC102627257 isoform X1

    2. XM_006473915.4 → XP_006473978.1  uncharacterized protein LOC102627257 isoform X2

      See identical proteins and their annotated locations for XP_006473978.1

      UniProtKB/TrEMBL
      A0A067EW93, A0A067EWE0
      Conserved Domains (1) summary
      cd14943
      Location:25 → 182
      TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex
    Nucleotide Protein
    Heading Accession and Version

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