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    LOC101217277 probable galactinol--sucrose galactosyltransferase 5-like [ Cucumis sativus (cucumber) ]

    Gene ID: 101217277, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101217277
    Gene description
    probable galactinol--sucrose galactosyltransferase 5-like
    Locus tag
    Csa_001762
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
    Also known as
    Rfs
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    Genomic context

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    See LOC101217277 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 3 NC_026657.2 (34644421..34648648)
    101 previous assembly ASM407v2 (GCF_000004075.2) 3 NC_026657.1 (33598052..33602280)

    Chromosome 3 - NC_026657.2Genomic Context describing neighboring genes Neighboring gene cysteine-rich receptor-like protein kinase 42 Neighboring gene uncharacterized LOC101216879 Neighboring gene NAC transcription factor 56 Neighboring gene uncharacterized LOC116402861

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Overexpression of AtGolS3 and CsRFS in poplar enhances ROS tolerance and represses defense response to leaf rust disease. La Mantia J, et al. Tree Physiol, 2018 Mar 1. PMID 28981890
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables galactinol-sucrose galactosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable galactinol--sucrose galactosyltransferase 5-like
    Names
    raffinose synthase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001288602.1 → NP_001275531.1  probable galactinol--sucrose galactosyltransferase 5-like

      See identical proteins and their annotated locations for NP_001275531.1

      Status: PROVISIONAL

      Source sequence(s)
      DQ414725
      UniProtKB/TrEMBL
      B5G4T9, Q9ZT62
      Conserved Domains (1) summary
      PLN02711
      Location:1 → 784
      PLN02711; Probable galactinol--sucrose galactosyltransferase

    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026657.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      34644421..34648648
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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