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    LOC18017274 pyruvate decarboxylase 4 [ Eutrema salsugineum ]

    Gene ID: 18017274, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC18017274
    Gene description
    pyruvate decarboxylase 4
    Locus tag
    EUTSA_v10013008mg
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Eutrema salsugineum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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    Genomic context

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    See LOC18017274 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256829.1 (264668..267134)

    NW_006256829.1Genomic Context describing neighboring genes Neighboring gene mitochondrial succinate-fumarate transporter 1 Neighboring gene small nucleolar RNA snoR144 Neighboring gene transcription factor bHLH140 Neighboring gene UPF0098 protein aq_1250

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006256829 Unplaced Scaffold Reference Eutsalg1_0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables carboxy-lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables thiamine pyrophosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pyruvate decarboxylase 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Eutsalg1_0

    Genomic

    1. NW_006256829.1 Reference Eutsalg1_0

      Range
      264668..267134
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006398567.2 → XP_006398630.1  pyruvate decarboxylase 4

      See identical proteins and their annotated locations for XP_006398630.1

      UniProtKB/TrEMBL
      V4LJW4
      Conserved Domains (4) summary
      cd07038
      Location:49 → 210
      TPP_PYR_PDC_IPDC_like; Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins
      PLN02573
      Location:31 → 607
      PLN02573; pyruvate decarboxylase
      cd02005
      Location:408 → 590
      TPP_PDC_IPDC; Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of ...
      pfam00205
      Location:243 → 362
      TPP_enzyme_M; Thiamine pyrophosphate enzyme, central domain
    Nucleotide Protein
    Heading Accession and Version

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