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    LOC7491608 nudix hydrolase 26, chloroplastic [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7491608, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC7491608
    Gene description
    nudix hydrolase 26, chloroplastic
    Locus tag
    POPTR_010G242100v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC7491608 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 10 NC_037294.2 (21937570..21939965)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 10 NC_037294.1 (21877095..21879476)

    Chromosome 10 - NC_037294.2Genomic Context describing neighboring genes Neighboring gene exocyst complex component EXO70A1 Neighboring gene uncharacterized LOC7491609 Neighboring gene probable galacturonosyltransferase-like 4 Neighboring gene uncharacterized LOC18102784

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables bis(5'-adenosyl)-pentaphosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleoside phosphate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribose phosphate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nudix hydrolase 26, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037294.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      21937570..21939965
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002316448.4 → XP_002316484.2  nudix hydrolase 26, chloroplastic

      See identical proteins and their annotated locations for XP_002316484.2

      UniProtKB/TrEMBL
      B9HVK3
      Conserved Domains (1) summary
      cd03671
      Location:67 → 216
      Ap4A_hydrolase_plant_like; Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant ...
    Nucleotide Protein
    Heading Accession and Version

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