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    LOC102602725 callose synthase 7-like [ Solanum tuberosum (potato) ]

    Gene ID: 102602725, updated on 2-Nov-2023

    Summary

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    Gene symbol
    LOC102602725
    Gene description
    callose synthase 7-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum tuberosum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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    Genomic context

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    See LOC102602725 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    43
    Annotation release Status Assembly Chr Location
    101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239028.1 (1588696..1616961)

    NW_006239028.1Genomic Context describing neighboring genes Neighboring gene probable WRKY transcription factor 71 Neighboring gene probable receptor-like protein kinase At2g42960 Neighboring gene GDSL esterase/lipase At4g10955-like Neighboring gene uncharacterized LOC102603394

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006239028.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 1,3-beta-D-glucan synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in (1->3)-beta-D-glucan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of 1,3-beta-D-glucan synthase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    callose synthase 7-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SolTub_3.0 Primary Assembly

    Genomic

    1. NW_006239028.1 Reference SolTub_3.0 Primary Assembly

      Range
      1588696..1616961
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006348897.2 → XP_006348959.1  callose synthase 7-like isoform X1

      Conserved Domains (3) summary
      pfam02364
      Location:1031 → 1774
      Glucan_synthase; 1,3-beta-glucan synthase component
      pfam04652
      Location:58 → 180
      Vta1; Vta1 like
      pfam14288
      Location:338 → 438
      FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

    2. XM_015309416.1 → XP_015164902.1  callose synthase 7-like isoform X2

      Conserved Domains (2) summary
      pfam02364
      Location:762 → 1499
      Glucan_synthase; 1,3-beta-glucan synthase component
      pfam14288
      Location:69 → 169
      FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
    Nucleotide Protein
    Heading Accession and Version

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