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    SGCG sarcoglycan gamma [ Vicugna pacos (alpaca) ]

    Gene ID: 102540683, updated on 10-Mar-2024

    Summary

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    Gene symbol
    SGCG
    Gene description
    sarcoglycan gamma
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vicugna pacos
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
    Orthologs
    human mouse all
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    Genomic context

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    See SGCG in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current VicPac3.1 (GCF_000164845.3) 14 Unlocalized Scaffold NW_021964184.1 (29064982..29090612, complement)
    101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882946.1 (664754..690001, complement)

    NW_021964184.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116283364 Neighboring gene sacsin molecular chaperone Neighboring gene uncharacterized LOC116283367 Neighboring gene uncharacterized LOC116283368

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cardiac muscle tissue development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in heart contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of sarcoglycan complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in sarcolemma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    gamma-sarcoglycan
    Names
    sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference VicPac3.1 Primary Assembly

    Genomic

    1. NW_021964184.1 Reference VicPac3.1 Primary Assembly

      Range
      29064982..29090612 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006216237.3 → XP_006216299.1  gamma-sarcoglycan

      UniProtKB/TrEMBL
      A0A6I9IN07
      Conserved Domains (1) summary
      pfam04790
      Location:25 → 278
      Sarcoglycan_1; Sarcoglycan complex subunit protein
    Nucleotide Protein
    Heading Accession and Version

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