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    Asph Aspartyl beta-hydroxylase [ Musca domestica (house fly) ]

    Gene ID: 101896755, updated on 10-Oct-2024

    Summary

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    Gene symbol
    Asph
    Gene description
    Aspartyl beta-hydroxylase
    See related
    VectorBase:MDOMA2_008446
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Musca domestica
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Musca
    Orthologs
    fruit fly all
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    Genomic context

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    See Asph in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_08 current Musca_domestica.polishedcontigs.V.1.1 (GCF_030504385.1) Unplaced Scaffold NW_026712409.1 (23221240..23242609, complement)
    102 previous assembly Musca_domestica-2.0.2 (GCF_000371365.1) Unplaced Scaffold NW_004764825.1 (325182..346561, complement)

    NW_026712409.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101896455 Neighboring gene uncharacterized LOC101896636 Neighboring gene CDGSH iron-sulfur domain-containing protein 3, mitochondrial Neighboring gene microtubule-associated protein RP/EB family member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptomic analysis of the housefly (Musca domestica) larva using massively parallel pyrosequencing. Liu F, et al. Mol Biol Rep, 2012 Feb. PMID 21643958
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidyl-aspartic acid 3-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-aspartic acid hydroxylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA ligase 1; glutamic acid-rich protein; probable serine/threonine-protein kinase kinX

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030504385.1-RS_2023_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Musca_domestica.polishedcontigs.V.1.1 Primary Assembly

    Genomic

    1. NW_026712409.1 Reference Musca_domestica.polishedcontigs.V.1.1 Primary Assembly

      Range
      23221240..23242609 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059130766.1 → XP_058986749.1  glutamic acid-rich protein isoform X1

    2. XM_059130765.1 → XP_058986748.1  glutamic acid-rich protein isoform X1

    3. XM_059130768.1 → XP_058986751.1  glutamic acid-rich protein isoform X3

    4. XM_059130769.1 → XP_058986752.1  probable serine/threonine-protein kinase kinX isoform X5

    5. XM_059130767.1 → XP_058986750.1  DNA ligase 1 isoform X2

    6. XM_059130770.1 → XP_058986753.1  DNA ligase 1 isoform X6

    7. XM_020036034.2 → XP_019891593.1  glutamic acid-rich protein isoform X4

      UniProtKB/TrEMBL
      A0A9J7DDV7, T1P9W7

    8. XM_005181446.4 → XP_005181503.1  DNA ligase 1 isoform X7

      UniProtKB/TrEMBL
      A0A1I8MQ54, T1P9W7

    9. XM_005181447.4 → XP_005181504.1  DNA ligase 1 isoform X8

      UniProtKB/TrEMBL
      A0A1I8MQ49, T1PKQ9

    RNA

    1. XR_009344081.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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