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    ubtfl upstream binding transcription factor, like [ Haplochromis burtoni (Burton's mouthbrooder) ]

    Gene ID: 102309811, updated on 10-Mar-2024

    Summary

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    Gene symbol
    ubtfl
    Gene description
    upstream binding transcription factor, like
    See related
    Ensembl:ENSHBUG00000009713
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Haplochromis burtoni
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
    Orthologs
    zebrafish all
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    Genomic context

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    See ubtfl in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582844.1 (285228..297990)
    101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179893.1 (282399..295628)

    NW_024582844.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102309182 Neighboring gene transmembrane and ubiquitin-like domain containing 1 Neighboring gene Fas-activated serine/threonine kinase Neighboring gene AFG3-like AAA ATPase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    upstream binding transcription factor, like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NCSU_Asbu1 Primary Assembly

    Genomic

    1. NW_024582844.1 Reference NCSU_Asbu1 Primary Assembly

      Range
      285228..297990
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005946407.2 → XP_005946469.1  upstream binding transcription factor, like isoform X1

      Conserved Domains (2) summary
      cd01390
      Location:157 → 222
      HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
      cl00082
      Location:473 → 546
      HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...

    2. XM_014341368.2 → XP_014196854.1  upstream binding transcription factor, like isoform X2

      UniProtKB/TrEMBL
      A0A3Q2VA68
      Related
      ENSHBUP00000008227.1
      Conserved Domains (2) summary
      cd01390
      Location:112 → 177
      HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
      cl00082
      Location:428 → 501
      HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
    Nucleotide Protein
    Heading Accession and Version

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