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    LOC102233977 chondroitin sulfate N-acetylgalactosaminyltransferase 1-like [ Xiphophorus maculatus (southern platyfish) ]

    Gene ID: 102233977, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC102233977
    Gene description
    chondroitin sulfate N-acetylgalactosaminyltransferase 1-like
    See related
    Ensembl:ENSXMAG00000016212
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xiphophorus maculatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
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    Genomic context

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    See LOC102233977 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current X_maculatus-5.0-male (GCF_002775205.1) 12 NC_036454.1 (14725301..14733696)
    101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372180.1 (4233973..4239533)

    Chromosome 12 - NC_036454.1Genomic Context describing neighboring genes Neighboring gene gamma-glutamyl hydrolase-like Neighboring gene ring finger protein 122 Neighboring gene SH2B adaptor protein 3 Neighboring gene PH domain containing endocytic trafficking adaptor 1 Neighboring gene proline rich 16

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chondroitin sulfate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi cisterna membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chondroitin sulfate N-acetylgalactosaminyltransferase 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference X_maculatus-5.0-male Primary Assembly

    Genomic

    1. NC_036454.1 Reference X_maculatus-5.0-male Primary Assembly

      Range
      14725301..14733696
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005795054.2 → XP_005795111.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1-like

      UniProtKB/TrEMBL
      M4AP50
      Related
      ENSXMAP00000016245.1, ENSXMAT00000016269.2
      Conserved Domains (1) summary
      cl11394
      Location:141 → 512
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    Nucleotide Protein Strain
    Heading Accession and Version

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