U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC18438113 uncharacterized LOC18438113 [ Amborella trichopoda ]

    Gene ID: 18438113, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC18438113
    Gene description
    uncharacterized LOC18438113
    Locus tag
    AMTR_s00013p00192790
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Amborella trichopoda
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC18438113 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006499436.1 (3425211..3493202)

    NW_006499436.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 78A4 Neighboring gene uncharacterized LOC105420969 Neighboring gene 65-kDa microtubule-associated protein 8 Neighboring gene protease HtpX homolog

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_006499436.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC18438113

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference AMTR1.0 Primary Assembly

    Genomic

    1. NW_006499436.1 Reference AMTR1.0 Primary Assembly

      Range
      3425211..3493202
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011626594.2 → XP_011624896.1  uncharacterized protein LOC18438113 isoform X1

      UniProtKB/TrEMBL
      W1PIY1
      Conserved Domains (3) summary
      COG2319
      Location:449 → 852
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:501 → 543
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:493 → 838
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_011626595.2 → XP_011624897.1  uncharacterized protein LOC18438113 isoform X2

      UniProtKB/TrEMBL
      W1PIY1
      Conserved Domains (3) summary
      COG2319
      Location:444 → 847
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:496 → 538
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:488 → 833
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    3. XM_011626596.2 → XP_011624898.1  uncharacterized protein LOC18438113 isoform X3

      UniProtKB/TrEMBL
      W1PIY1
      Conserved Domains (3) summary
      COG2319
      Location:456 → 719
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:457 → 496
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:456 → 719
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases