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    UBE3B ubiquitin protein ligase E3B [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100394165, updated on 8-Mar-2024

    Summary

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    Gene symbol
    UBE3B
    Gene description
    ubiquitin protein ligase E3B
    See related
    Ensembl:ENSCJAG00000009897
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Orthologs
    human mouse all
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    Genomic context

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    See UBE3B in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 9 NC_071450.1 (108874146..108934692)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 9 NC_048391.1 (109944045..110005049)

    Chromosome 9 - NC_071450.1Genomic Context describing neighboring genes Neighboring gene forkhead box N4 Neighboring gene myosin IH Neighboring gene potassium channel tetramerization domain containing 10 Neighboring gene U4 spliceosomal RNA Neighboring gene metabolism of cobalamin associated B Neighboring gene mevalonate kinase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin-protein ligase E3B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071450.1 Reference mCalJa1.2.pat.X

      Range
      108874146..108934692
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002752981.5 → XP_002753027.1  ubiquitin-protein ligase E3B isoform X1

      See identical proteins and their annotated locations for XP_002753027.1

      UniProtKB/TrEMBL
      F7ECZ1, U3FK35
      Conserved Domains (1) summary
      cd00078
      Location:682 → 1066
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

    2. XM_017976359.3 → XP_017831848.1  ubiquitin-protein ligase E3B isoform X1

      UniProtKB/TrEMBL
      F7ECZ1, U3FK35
      Conserved Domains (1) summary
      cd00078
      Location:682 → 1066
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

    3. XM_035257520.2 → XP_035113411.1  ubiquitin-protein ligase E3B isoform X1

      UniProtKB/TrEMBL
      F7ECZ1, U3FK35
      Conserved Domains (1) summary
      cd00078
      Location:682 → 1066
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

    4. XM_017976363.3 → XP_017831852.1  ubiquitin-protein ligase E3B isoform X3

      Conserved Domains (1) summary
      cd00078
      Location:682 → 1004
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

    5. XM_017976362.3 → XP_017831851.1  ubiquitin-protein ligase E3B isoform X2

      Conserved Domains (1) summary
      cd00078
      Location:682 → 974
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

    6. XM_035257524.2 → XP_035113415.1  ubiquitin-protein ligase E3B isoform X2

      Conserved Domains (1) summary
      cd00078
      Location:682 → 974
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

    7. XM_017976364.2 → XP_017831853.1  ubiquitin-protein ligase E3B isoform X5

      Related
      ENSCJAP00000018330.2
      Conserved Domains (1) summary
      cl00077
      Location:682 → 788
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

    8. XM_054238828.1 → XP_054094803.1  ubiquitin-protein ligase E3B isoform X4

    Nucleotide Protein
    Heading Accession and Version

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