U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    grhl3.S grainyhead like transcription factor 3 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 494716, updated on 4-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    grhl3.S
    Official Full Name
    grainyhead like transcription factor 3 S homeolog
    Primary source
    Xenbase:XB-GENE-17342846
    Locus tag
    XELAEV_18003223mg
    See related
    EnsemblRapid:ENSXLAG00005009454 AllianceGenome:Xenbase:XB-GENE-17342846
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    som; tfcp2l4
    Summary
    Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Orthologous to human GRHL3 (grainyhead like transcription factor 3). [provided by Alliance of Genome Resources, Nov 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See grhl3.S in Genome Data Viewer
    Location:
    chromosome: 2S
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (71709700..71725146)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694834.1 (1455019..1470559)

    Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene interferon lambda receptor 1 Neighboring gene cytochrome P450 family 4 subfamily F member 22 S homeolog Neighboring gene sperm-tail PG-rich repeat containing 1 S homeolog Neighboring gene NIPA-like domain containing 3 S homeolog

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    grainyhead-like protein 3 homolog
    Names
    grainyhead 3

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      71709700..71725146
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018241322.2 → XP_018096811.1  grainyhead-like protein 3 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8J0U5W1, Q640H0
      Related
      ENSXLAP00005027608.1, ENSXLAT00005028342.1

    2. XM_018241321.2 → XP_018096810.1  grainyhead-like protein 3 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8J0U4L0, Q640H0
      Related
      ENSXLAP00005027619.1, ENSXLAT00005028353.1
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials