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    LOC101755544 homeobox-leucine zipper protein HOX12 [ Setaria italica (foxtail millet) ]

    Gene ID: 101755544, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC101755544
    Gene description
    homeobox-leucine zipper protein HOX12
    Locus tag
    SETIT_037255mg
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Setaria italica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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    Genomic context

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    See LOC101755544 in Genome Data Viewer
    Location:
    chromosome: IX
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103 current Setaria_italica_v2.0 (GCF_000263155.2) IX NC_028458.1 (53764169..53765782)
    101 previous assembly Setaria V1 (GCF_000263155.1) Unplaced Scaffold NW_004675969.1 (53764346..53765996)

    Chromosome IX - NC_028458.1Genomic Context describing neighboring genes Neighboring gene protein CLT2, chloroplastic Neighboring gene methyltransferase-like protein 2 Neighboring gene deSI-like protein At4g17486 Neighboring gene serine--tRNA ligase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox-leucine zipper protein HOX12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Setaria italica Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Setaria_italica_v2.0 Primary Assembly

    Genomic

    1. NC_028458.1 Reference Setaria_italica_v2.0 Primary Assembly

      Range
      53764169..53765782
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004985270.4 → XP_004985327.1  homeobox-leucine zipper protein HOX12

      UniProtKB/TrEMBL
      K4AEE8
      Conserved Domains (1) summary
      pfam00046
      Location:58 → 111
      Homeobox; Homeobox domain
    Nucleotide Protein Strain
    Heading Accession and Version

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