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    LOC101784443 proteasome subunit alpha type-2 [ Setaria italica (foxtail millet) ]

    Gene ID: 101784443, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC101784443
    Gene description
    proteasome subunit alpha type-2
    Locus tag
    SETIT_037289mg
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Setaria italica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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    Genomic context

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    See LOC101784443 in Genome Data Viewer
    Location:
    chromosome: IX
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current Setaria_italica_v2.0 (GCF_000263155.2) IX NC_028458.1 (44012398..44018096, complement)
    101 previous assembly Setaria V1 (GCF_000263155.1) Unplaced Scaffold NW_004675969.1 (44011931..44018293, complement)

    Chromosome IX - NC_028458.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101783629 Neighboring gene ras-associated and pleckstrin homology domains-containing protein 1 Neighboring gene intron-binding protein aquarius Neighboring gene uncharacterized LOC101785244 Neighboring gene uncharacterized LOC101785129

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of proteasome core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proteasome core complex, alpha-subunit complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    proteasome subunit alpha type-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Setaria italica Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Setaria_italica_v2.0 Primary Assembly

    Genomic

    1. NC_028458.1 Reference Setaria_italica_v2.0 Primary Assembly

      Range
      44012398..44018096 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004984122.3 → XP_004984179.1  proteasome subunit alpha type-2

      UniProtKB/TrEMBL
      K4AEI2
      Conserved Domains (1) summary
      cd03750
      Location:6 → 231
      proteasome_alpha_type_2; The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming ...
    Nucleotide Protein Strain
    Heading Accession and Version

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