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    LOC101770139 cytochrome P450 84A1 [ Setaria italica (foxtail millet) ]

    Gene ID: 101770139, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC101770139
    Gene description
    cytochrome P450 84A1
    Locus tag
    SETIT_035174mg
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Setaria italica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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    Genomic context

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    See LOC101770139 in Genome Data Viewer
    Location:
    chromosome: IX
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    103 current Setaria_italica_v2.0 (GCF_000263155.2) IX NC_028458.1 (13855116..13859487)
    101 previous assembly Setaria V1 (GCF_000263155.1) Unplaced Scaffold NW_004675969.1 (13855141..13859475)

    Chromosome IX - NC_028458.1Genomic Context describing neighboring genes Neighboring gene SH3 domain-containing protein 2 Neighboring gene uncharacterized LOC101769730 Neighboring gene transmembrane and coiled-coil domain-containing protein 4 Neighboring gene zinc finger CCCH domain-containing protein 44

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lignin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytochrome P450 84A1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Setaria italica Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Setaria_italica_v2.0 Primary Assembly

    Genomic

    1. NC_028458.1 Reference Setaria_italica_v2.0 Primary Assembly

      Range
      13855116..13859487
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004982569.3 → XP_004982626.1  cytochrome P450 84A1

      UniProtKB/TrEMBL
      K4A8G8
      Conserved Domains (1) summary
      cl12078
      Location:49 → 522
      p450; Cytochrome P450
    Nucleotide Protein Strain
    Heading Accession and Version

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