U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC101761523 scarecrow-like protein 8 [ Setaria italica (foxtail millet) ]

    Gene ID: 101761523, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC101761523
    Gene description
    scarecrow-like protein 8
    Locus tag
    SETIT_016627mg
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Setaria italica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC101761523 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    103 current Setaria_italica_v2.0 (GCF_000263155.2) I NC_028450.1 (34604505..34606920, complement)
    101 previous assembly Setaria V1 (GCF_000263155.1) Unplaced Scaffold NW_004675961.1 (34604502..34606879, complement)

    Chromosome I - NC_028450.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105914307 Neighboring gene serine/threonine receptor-like kinase NFP Neighboring gene uncharacterized LOC106804283 Neighboring gene MADS-box transcription factor 6

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    scarecrow-like protein 8

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Setaria italica Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Setaria_italica_v2.0 Primary Assembly

    Genomic

    1. NC_028450.1 Reference Setaria_italica_v2.0 Primary Assembly

      Range
      34604505..34606920 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004953401.4 → XP_004953458.1  scarecrow-like protein 8

      UniProtKB/TrEMBL
      K3YQT3
      Conserved Domains (1) summary
      pfam03514
      Location:272 → 636
      GRAS; GRAS domain family
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases