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    LOC101263547 protein PHR1-LIKE 3-like [ Solanum lycopersicum (tomato) ]

    Gene ID: 101263547, updated on 1-Nov-2024

    Summary

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    Gene symbol
    LOC101263547
    Gene description
    protein PHR1-LIKE 3-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC101263547 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 9 NC_090808.1 (68576018..68580668)
    103 previous assembly SL3.0 (GCF_000188115.4) 9 NC_015446.3 (71570433..71574289)

    Chromosome 9 - NC_015446.3Genomic Context describing neighboring genes Neighboring gene non-lysosomal glucosylceramidase Neighboring gene uncharacterized LOC101245587 Neighboring gene probable indole-3-pyruvate monooxygenase YUCCA10 Neighboring gene uncharacterized LOC104649407 Neighboring gene ER lumen protein-retaining receptor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein PHR1-LIKE 3-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090808.1 Reference SLM_r2.1 Primary Assembly

      Range
      68576018..68580668
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004247806.5 → XP_004247854.1  protein PHR1-LIKE 3-like

      UniProtKB/TrEMBL
      K4CWL4
      Conserved Domains (2) summary
      TIGR01557
      Location:51 → 107
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:148 → 193
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
    Nucleotide Protein
    Heading Accession and Version

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