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    LOC101250666 heavy metal-associated isoprenylated plant protein 31 [ Solanum lycopersicum (tomato) ]

    Gene ID: 101250666, updated on 1-Nov-2024

    Summary

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    Gene symbol
    LOC101250666
    Gene description
    heavy metal-associated isoprenylated plant protein 31
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC101250666 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 3 NC_090802.1 (3989330..3990911)
    103 previous assembly SL3.0 (GCF_000188115.4) 3 NC_015440.3 (3206478..3208060)

    Chromosome 3 - NC_090802.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101268069 Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene heavy metal-associated isoprenylated plant protein 39 Neighboring gene low-temperature-induced 65 kDa protein-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heavy metal-associated isoprenylated plant protein 31
    Names
    heavy metal-associated isoprenylated plant protein 27

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090802.1 Reference SLM_r2.1 Primary Assembly

      Range
      3989330..3990911
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004234345.5 → XP_004234393.1  heavy metal-associated isoprenylated plant protein 31 isoform X1

      UniProtKB/TrEMBL
      A0A3Q7FHC6
      Conserved Domains (1) summary
      cd00371
      Location:6 → 67
      HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...

    2. XM_019212801.3 → XP_019068346.1  heavy metal-associated isoprenylated plant protein 31 isoform X2

      UniProtKB/TrEMBL
      A0A3Q7FHC6
    Nucleotide Protein
    Heading Accession and Version

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