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    LOC101263553 ras-related protein RABG3f [ Solanum lycopersicum (tomato) ]

    Gene ID: 101263553, updated on 1-Nov-2024

    Summary

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    Gene symbol
    LOC101263553
    Gene description
    ras-related protein RABG3f
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC101263553 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 1 NC_090800.1 (92535144..92538758, complement)
    103 previous assembly SL3.0 (GCF_000188115.4) 1 NC_015438.3 (96363608..96367142, complement)

    Chromosome 1 - NC_015438.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109120020 Neighboring gene SWI/SNF complex subunit SWI3D Neighboring gene putative proline-rich receptor-like protein kinase PERK6 Neighboring gene coatomer subunit gamma

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in vacuolar membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ras-related protein RABG3f

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090800.1 Reference SLM_r2.1 Primary Assembly

      Range
      92535144..92538758 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004230901.5 → XP_004230949.1  ras-related protein RABG3f

      See identical proteins and their annotated locations for XP_004230949.1

      UniProtKB/TrEMBL
      A0A3Q7ETC3
      Conserved Domains (1) summary
      cd01862
      Location:9 → 182
      Rab7; Rab GTPase family 7 (Rab7)
    Nucleotide Protein
    Heading Accession and Version

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