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    LOC101243809 phospholipid-transporting ATPase 3-like [ Solanum lycopersicum (tomato) ]

    Gene ID: 101243809, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC101243809
    Gene description
    phospholipid-transporting ATPase 3-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    103 current SL3.0 (GCF_000188115.4) 1 NC_015438.3 (7550017..7578045)
    102 previous assembly SL2.50 (GCF_000188115.3) 1 NC_015438.2 (7593687..7621714)

    Chromosome 1 - NC_015438.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109120441 Neighboring gene uncharacterized LOC104647514 Neighboring gene uncharacterized LOC101268784 Neighboring gene uncharacterized LOC101255024

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATPase-coupled intramembrane lipid transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phospholipid translocation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phospholipid-transporting ATPase 3-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SL3.0 Primary Assembly

    Genomic

    1. NC_015438.3 Reference SL3.0 Primary Assembly

      Range
      7550017..7578045
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004228317.4 → XP_004228365.1  phospholipid-transporting ATPase 3-like

      UniProtKB/TrEMBL
      A0A3Q7EAE6
      Conserved Domains (7) summary
      TIGR01652
      Location:57 → 1137
      ATPase-Plipid; phospholipid-translocating P-type ATPase, flippase
      pfam00122
      Location:113 → 198
      E1-E2_ATPase; E1-E2 ATPase
      pfam13246
      Location:509 → 612
      Cation_ATPase; Cation transport ATPase (P-type)
      pfam16209
      Location:43 → 107
      PhoLip_ATPase_N; Phospholipid-translocating ATPase N-terminal
      pfam16212
      Location:880 → 1129
      PhoLip_ATPase_C; Phospholipid-translocating P-type ATPase C-terminal
      cl00297
      Location:665 → 728
      R3H; R3H domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. R3H domains are found in proteins together with ATPase domains, SF1 helicase domains, SF2 DEAH helicase domains, Cys-rich ...
      cl21460
      Location:849 → 897
      HAD_like; Haloacid Dehalogenase-like Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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