zgc:77158 zgc:77158 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zgc:77158provided by ZNC
Official Full Name: zgc:77158provided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-1799
See related: Ensembl:ENSDARG00000013784 AllianceGenome:ZFIN:ZDB-GENE-040426-1799
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to enable sucrose:proton symporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be active in membrane. Orthologous to human SLC45A3 (solute carrier family 45 member 3). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 25

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	25	NC_007136.7 (16881066..16941619)
105	previous assembly	GRCz10 (GCF_000002035.5)	25	NC_007136.6 (16784547..16845219)

Chromosome 25 - NC_007136.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables sucrose:proton symporter activity	IBA Inferred from Biological aspect of Ancestor more info
enables transmembrane transporter activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within transmembrane transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: solute carrier family 45 member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_205672.1 → NP_991235.1 solute carrier family 45 member 3

See identical proteins and their annotated locations for NP_991235.1

Status: PROVISIONAL

Source sequence(s)

BC065675

UniProtKB/TrEMBL

Q6P0C2

Related

ENSDARP00000013620.7, ENSDART00000020259.10

Conserved Domains (2) summary

cd06174
Location:338 → 413

MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...

TIGR01301
Location:8 → 380

GPH_sucrose; GPH family sucrose/H+ symporter

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007136.7 Reference GRCz11 Primary Assembly

Range

16881066..16941619

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_068217351.1 → XP_068073452.1 solute carrier family 45 member 3 isoform X1

Related

ENSDARP00000140688.1, ENSDART00000159773.2
XM_009297894.4 → XP_009296169.1 solute carrier family 45 member 3 isoform X1

UniProtKB/TrEMBL

A0A8M3AP05, F1R4M7

Conserved Domains (2) summary

cd06174
Location:339 → 414

MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...

pfam07690
Location:25 → 415

MFS_1; Major Facilitator Superfamily
XM_068217352.1 → XP_068073453.1 solute carrier family 45 member 3 isoform X1