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    LOC101204503 hypothetical protein [ Cucumis sativus (cucumber) ]

    Gene ID: 101204503, updated on 26-Jun-2024

    Summary

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    Gene symbol
    LOC101204503
    Gene description
    hypothetical protein
    Locus tag
    Csa_021793
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC101204503 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 2 NC_026656.2 (18529197..18531297, complement)
    101 previous assembly ASM407v2 (GCF_000004075.2) 2 NC_026656.1 (16982034..16984092, complement)

    Chromosome 2 - NC_026656.2Genomic Context describing neighboring genes Neighboring gene DPH4 homolog Neighboring gene uncharacterized LOC116402088 Neighboring gene uncharacterized LOC101221028 Neighboring gene probable carboxylesterase 2 Neighboring gene U4 spliceosomal RNA Neighboring gene patatin-like protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. Li Z, et al. BMC Genomics, 2011 Nov 2. PMID 22047402, Free PMC Article
    2. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. Guo S, et al. BMC Genomics, 2010 Jun 17. PMID 20565788, Free PMC Article
    3. The genome of the cucumber, Cucumis sativus L. Huang S, et al. Nat Genet, 2009 Dec. PMID 19881527
    4. An integrated genetic and cytogenetic map of the cucumber genome. Ren Y, et al. PLoS One, 2009 Jun 4. PMID 19495411, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in tricarboxylic acid cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of respiratory chain complex II (succinate dehydrogenase) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    succinate dehydrogenase subunit 5, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026656.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      18529197..18531297 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004152683.3 → XP_004152731.1  succinate dehydrogenase subunit 5, mitochondrial

      See identical proteins and their annotated locations for XP_004152731.1

      UniProtKB/TrEMBL
      A0A0A0LP60
      Conserved Domains (1) summary
      cl19720
      Location:1 → 241
      DUF4370; Domain of unknown function (DUF4370)
    Nucleotide Protein
    Heading Accession and Version

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