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    LOC101205143 U-box domain-containing protein 16 [ Cucumis sativus (cucumber) ]

    Gene ID: 101205143, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101205143
    Gene description
    U-box domain-containing protein 16
    Locus tag
    Csa_012053
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC101205143 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 4 NC_026658.2 (16225528..16228097)
    101 previous assembly ASM407v2 (GCF_000004075.2) 4 NC_026658.1 (13395722..13397953)

    Chromosome 4 - NC_026658.2Genomic Context describing neighboring genes Neighboring gene CBL-interacting protein kinase 2 Neighboring gene CBL-interacting serine/threonine-protein kinase 14 Neighboring gene transcription repressor OFP1 Neighboring gene uncharacterized LOC101207912

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell surface receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U-box domain-containing protein 16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026658.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      16225528..16228097
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004150929.3 → XP_004150977.1  U-box domain-containing protein 16

      See identical proteins and their annotated locations for XP_004150977.1

      UniProtKB/TrEMBL
      A0A0A0L1I5
      Conserved Domains (2) summary
      smart00504
      Location:274 → 337
      Ubox; Modified RING finger domain
      cd16664
      Location:277 → 315
      RING-Ubox_PUB; U-box domain, a modified RING finger [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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