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    LOC101210134 protein AE7-like 1 [ Cucumis sativus (cucumber) ]

    Gene ID: 101210134, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101210134
    Gene description
    protein AE7-like 1
    Locus tag
    Csa_014611
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC101210134 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 4 NC_026658.2 (3288867..3294260)
    101 previous assembly ASM407v2 (GCF_000004075.2) 4 NC_026658.1 (3202398..3205418)

    Chromosome 4 - NC_026658.2Genomic Context describing neighboring genes Neighboring gene vacuolar sorting protein 39 Neighboring gene protein RTF1 homolog Neighboring gene phosphatidylinositol transfer protein 3 Neighboring gene uncharacterized LOC101211037 Neighboring gene SCARECROW-LIKE protein 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. Li Z, et al. BMC Genomics, 2011 Nov 2. PMID 22047402, Free PMC Article
    2. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. Guo S, et al. BMC Genomics, 2010 Jun 17. PMID 20565788, Free PMC Article
    3. The genome of the cucumber, Cucumis sativus L. Huang S, et al. Nat Genet, 2009 Dec. PMID 19881527
    4. An integrated genetic and cytogenetic map of the cucumber genome. Ren Y, et al. PLoS One, 2009 Jun 4. PMID 19495411, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in iron-sulfur cluster assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein maturation by [4Fe-4S] cluster transfer IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein AE7-like 1
    Names
    MIP18 family protein At1g68310

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026658.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      3288867..3294260
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031884397.1 → XP_031740257.1  protein AE7-like 1

      UniProtKB/TrEMBL
      A0A0A0KUM2
      Conserved Domains (1) summary
      cl00941
      Location:29 → 149
      FeS_assembly_P; Iron-sulfur cluster assembly protein

    2. XM_004149104.3 → XP_004149152.1  protein AE7-like 1

      See identical proteins and their annotated locations for XP_004149152.1

      UniProtKB/TrEMBL
      A0A0A0KUM2
      Conserved Domains (1) summary
      cl00941
      Location:29 → 149
      FeS_assembly_P; Iron-sulfur cluster assembly protein

    RNA

    1. XR_004216135.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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