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    LOC101218314 hypothetical protein [ Cucumis sativus (cucumber) ]

    Gene ID: 101218314, updated on 7-Apr-2023

    Summary

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    Gene symbol
    LOC101218314
    Gene description
    hypothetical protein
    Locus tag
    Csa_012224
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC101218314 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 4 NC_026658.2 (26269503..26272947, complement)
    101 previous assembly ASM407v2 (GCF_000004075.2) 4 NC_026658.1 (23122411..23125810, complement)

    Chromosome 4 - NC_026658.2Genomic Context describing neighboring genes Neighboring gene protein MULTIPLE CHLOROPLAST DIVISION SITE 1 Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene uncharacterized LOC101207260 Neighboring gene protein CUP-SHAPED COTYLEDON 3 Neighboring gene cysteine protease XCP2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. Li Z, et al. BMC Genomics, 2011 Nov 2. PMID 22047402, Free PMC Article
    2. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. Guo S, et al. BMC Genomics, 2010 Jun 17. PMID 20565788, Free PMC Article
    3. The genome of the cucumber, Cucumis sativus L. Huang S, et al. Nat Genet, 2009 Dec. PMID 19881527
    4. An integrated genetic and cytogenetic map of the cucumber genome. Ren Y, et al. PLoS One, 2009 Jun 4. PMID 19495411, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein PLASTID MOVEMENT IMPAIRED 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026658.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      26269503..26272947 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004145555.3 → XP_004145603.1  protein PLASTID MOVEMENT IMPAIRED 1

      See identical proteins and their annotated locations for XP_004145603.1

      UniProtKB/TrEMBL
      A0A0A0L3F0
      Conserved Domains (1) summary
      pfam10358
      Location:132 → 283
      NT-C2; N-terminal C2 in EEIG1 and EHBP1 proteins
    Nucleotide Protein
    Heading Accession and Version

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