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    LOC101204967 pentatricopeptide repeat-containing protein At2g29760, chloroplastic [ Cucumis sativus (cucumber) ]

    Gene ID: 101204967, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101204967
    Gene description
    pentatricopeptide repeat-containing protein At2g29760, chloroplastic
    Locus tag
    Csa_023315
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC101204967 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 1 NC_026655.2 (22123548..22126382)
    101 previous assembly ASM407v2 (GCF_000004075.2) 1 NC_026655.1 (18638430..18640913)

    Chromosome 1 - NC_026655.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101203517 Neighboring gene 60S acidic ribosomal protein P0 Neighboring gene E3 ubiquitin-protein ligase AIRP2 Neighboring gene iridoid synthase CYC2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At2g29760, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026655.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      22123548..22126382
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004145272.3 → XP_004145320.1  pentatricopeptide repeat-containing protein At2g29760, chloroplastic

      See identical proteins and their annotated locations for XP_004145320.1

      UniProtKB/TrEMBL
      A0A0A0M0R9
      Conserved Domains (2) summary
      PLN03077
      Location:42 → 731
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:428 → 455
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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