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    LOC101216305 GPI transamidase component PIG-S [ Cucumis sativus (cucumber) ]

    Gene ID: 101216305, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101216305
    Gene description
    GPI transamidase component PIG-S
    Locus tag
    Csa_004823
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC101216305 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 6 NC_026660.2 (1626375..1634315, complement)
    101 previous assembly ASM407v2 (GCF_000004075.2) 6 NC_026660.1 (1630599..1638474, complement)

    Chromosome 6 - NC_026660.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101216791 Neighboring gene transcription elongation factor TFIIS Neighboring gene E3 ubiquitin-protein ligase SHPRH Neighboring gene uncharacterized LOC105435747

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in attachment of GPI anchor to protein IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of GPI-anchor transamidase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GPI transamidase component PIG-S

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026660.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      1626375..1634315 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004138343.3 → XP_004138391.1  GPI transamidase component PIG-S

      See identical proteins and their annotated locations for XP_004138391.1

      UniProtKB/TrEMBL
      A0A0A0KBT3
      Conserved Domains (1) summary
      pfam10510
      Location:45 → 595
      PIG-S; Phosphatidylinositol-glycan biosynthesis class S protein
    Nucleotide Protein
    Heading Accession and Version

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