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    LOC101218049 actin-related protein 4 [ Cucumis sativus (cucumber) ]

    Gene ID: 101218049, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC101218049
    Gene description
    actin-related protein 4
    Locus tag
    Csa_014328
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC101218049 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 1 NC_026655.2 (2306979..2315305, complement)
    101 previous assembly ASM407v2 (GCF_000004075.2) 1 NC_026655.1 (2281113..2289391, complement)

    Chromosome 1 - NC_026655.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101217575 Neighboring gene carbon catabolite repressor protein 4 homolog 3 Neighboring gene protein ASPARTIC PROTEASE IN GUARD CELL 1 Neighboring gene protein ASPARTIC PROTEASE IN GUARD CELL 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. Li Z, et al. BMC Genomics, 2011 Nov 2. PMID 22047402, Free PMC Article
    2. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. Guo S, et al. BMC Genomics, 2010 Jun 17. PMID 20565788, Free PMC Article
    3. The genome of the cucumber, Cucumis sativus L. Huang S, et al. Nat Genet, 2009 Dec. PMID 19881527
    4. An integrated genetic and cytogenetic map of the cucumber genome. Ren Y, et al. PLoS One, 2009 Jun 4. PMID 19495411, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of NuA4 histone acetyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of SWI/SNF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    actin-related protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026655.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      2306979..2315305 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004138188.3 → XP_004138236.1  actin-related protein 4

      See identical proteins and their annotated locations for XP_004138236.1

      UniProtKB/TrEMBL
      A0A0A0LSM7
      Conserved Domains (1) summary
      pfam00022
      Location:7 → 445
      Actin

    2. XM_011650523.2 → XP_011648825.1  actin-related protein 4

      See identical proteins and their annotated locations for XP_011648825.1

      UniProtKB/TrEMBL
      A0A0A0LSM7
      Conserved Domains (1) summary
      pfam00022
      Location:7 → 445
      Actin
    Nucleotide Protein
    Heading Accession and Version

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