U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC102471905 calcitonin gene-related peptide 2 [ Tupaia chinensis (Chinese tree shrew) ]

    Gene ID: 102471905, updated on 9-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC102471905
    Gene description
    calcitonin gene-related peptide 2
    Locus tag
    TREES_T100011587
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tupaia chinensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Scandentia; Tupaiidae; Tupaia
    Also known as
    CALCA; Calcitonin
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC102471905 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current TupChi_1.0 (GCF_000334495.1) Unplaced Scaffold NW_006159538.1 (3637879..3643424)

    NW_006159538.1Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerase III subunit RPC7-like Neighboring gene calcitonin Neighboring gene uncharacterized LOC102471190 Neighboring gene uncharacterized LOC106734032 Neighboring gene vitamin D 25-hydroxylase Neighboring gene phosphodiesterase 3B

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_006159538 Unplaced Scaffold Reference TupChi_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sodium taurocholate cotransporting polypeptide is a functional receptor for human hepatitis B and D virus. Yan H, et al. Elife, 2012 Nov 13. PMID 23150796, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcitonin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hormone activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    calcitonin gene-related peptide 2; calcitonin
    Names
    calcitonin-related polypeptide alpha

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Tupaia chinensis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference TupChi_1.0

    Genomic

    1. NW_006159538.1 Reference TupChi_1.0

      Range
      3637879..3643424
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027768666.1 → XP_027624467.1  calcitonin gene-related peptide 2 isoform X3

    2. XM_027768662.1 → XP_027624463.1  calcitonin gene-related peptide 2 isoform X2

    3. XM_006142528.3 → XP_006142590.1  calcitonin isoform X1

      See identical proteins and their annotated locations for XP_006142590.1

      UniProtKB/TrEMBL
      L9LAK2
      Conserved Domains (2) summary
      smart00113
      Location:84 → 121
      CALCITONIN; calcitonin
      pfam00214
      Location:1 → 122
      Calc_CGRP_IAPP; Calcitonin / CGRP / IAPP family
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.