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    NHL domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839000, updated on 18-Sep-2024

    Summary

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    Official Full Name
    NHL domain-containing protein
    Primary source
    TAIR:AT1G23890
    Locus tag
    AT1G23890
    See related
    Araport:AT1G23890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T23E23.6; T23E23_6
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (8438766..8440866, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RS-containing zinc finger protein 21 Neighboring gene trehalose-phosphatase/synthase 9 Neighboring gene NHL domain-containing protein Neighboring gene gamma-adaptin 1 Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_102237.2
    NM_202173.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    NHL domain-containing protein
    NP_564209.1
    • NHL domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NHL repeat. subgroup (InterPro:IPR013017), NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT1G23880.1); Has 3260 Blast hits to 1426 proteins in 249 species: Archae - 112; Bacteria - 1411; Metazoa - 144; Fungi - 0; Plants - 190; Viruses - 0; Other Eukaryotes - 1403 (source: NCBI BLink).
    NP_973902.1
    • NHL domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NHL repeat. subgroup (InterPro:IPR013017), NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT1G23880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8438766..8440866 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102237.2 → NP_564209.1  NHL domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564209.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W760, Q945M3
      Conserved Domains (2) summary
      cd05819
      Location:103 → 146
      NHL; NHL repeat [structural motif]
      cl18310
      Location:79 → 184
      NHL; NHL repeat unit of beta-propeller proteins

    2. NM_202173.1 → NP_973902.1  NHL domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973902.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EHN8, F4I7N5
      Conserved Domains (2) summary
      cd05819
      Location:103 → 146
      NHL; NHL repeat [structural motif]
      cl18310
      Location:79 → 184
      NHL; NHL repeat unit of beta-propeller proteins
    Nucleotide Protein
    Heading Accession and Version

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