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    ATG18C autophagy-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818678, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ATG18C
    Official Full Name
    autophagy-like protein
    Primary source
    TAIR:AT2G40810
    Locus tag
    AT2G40810
    See related
    Araport:AT2G40810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATATG18C; homolog of yeast autophagy 18C; T20B5.1; T20B5_1
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    Genomic context

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    See ATG18C in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (17032412..17034600)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Calcium-dependent lipid-binding (CaLB domain) family protein Neighboring gene ncRNA Neighboring gene stomatal closure actin-binding-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001336866.1
    NM_129644.4
    NM_201921.2

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    autophagy-like protein
    NP_181613.2
    • homolog of yeast autophagy 18C (ATG18C); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) D (TAIR:AT3G56440.1); Has 1429 Blast hits to 1369 proteins in 244 species: Archae - 0; Bacteria - 43; Metazoa - 558; Fungi - 432; Plants - 215; Viruses - 2; Other Eukaryotes - 179 (source: NCBI BLink).
    NP_973650.1
    • homolog of yeast autophagy 18C (ATG18C); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) D (TAIR:AT3G56440.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      17032412..17034600
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129644.4 → NP_181613.2  autophagy-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181613.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22195, Q8GYD7
      UniProtKB/TrEMBL
      A0A178W0F3
      Conserved Domains (3) summary
      COG2319
      Location:20 → 276
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:162 → 199
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:35 → 274
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. NM_001336866.1 → NP_001324652.1  autophagy-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B0S0

    3. NM_201921.2 → NP_973650.1  autophagy-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973650.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22195, Q8GYD7
      UniProtKB/TrEMBL
      A0A178W0F3
      Conserved Domains (3) summary
      COG2319
      Location:20 → 276
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:162 → 199
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:35 → 274
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GYD7.1

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